1Q0W	Transport Protein	date	Jul 17, 2003
title	Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin Com
authors	K.A.Swanson, R.S.Kang, S.D.Stamenova, L.Hicke, I.Radhakrishnan
compound		source
Molecule: Vacuolar Protein Sorting-Associated Protein Vps27 Chain: A Fragment: Amino-Terminal Uim, Residues 256 To 278 Engineered: Yes		Synthetic: Yes Other_details: The Sequence Was Synthesized Using A Peptide Synthesizer. The Sequence Contains A Non-Native Tyrosine Re The Amino-Terminus (Residue Number 255). The Sequence Occur Naturally In S. Cerevisiae.;
Molecule: Ubiquitin Chain: B Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: (Ubi1 Or Rpl40a Or Yil148w) And (Ubi2 Or Rpl40b Or Yk And (Ubi3 Or Rps31 Or Ylr167w Or L9470.14) And (Ubi4 Or Scd Yll039c); Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3-A
method	Solution NMR
Primary reference	Solution structure of Vps27 UIM-ubiquitin complex important for endosomal sorting and receptor downregulation., Swanson KA, Kang RS, Stamenova SD, Hicke L, Radhakrishnan I, EMBO J 2003 Sep 15;22(18):4597-606. PMID:12970172

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (542 Kb) [Save to disk] Biological Unit Coordinates (1q0w.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 1Q0W Original NMR restraints for 1Q0W from PDB Retrieve 1Q0W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Q0W from S2C, [Save to disk]

View 1Q0W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Q0W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Q0W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1q0wa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1q0wb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1q0w_B] [1q0w] [1q0w_A] SWISS-PROT database: [P61864] [P40343] Domain organization of [UBIQ_YEAST] [VPS27_YEAST] by SWISSPFAM Domains found in 1Q0W: [UBQ] [UIM ] by SMART

Other resources with information on 1Q0W

Community annotation for 1Q0W at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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