1Q56 Metal Binding Protein date Aug 06, 2003
title Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In It Bound State
authors J.Stetefeld, A.T.Alexandrescu, M.W.Maciejewski, M.Jenny, K.Rathg T.Schulthess, R.Landwehr, S.Frank, M.A.Ruegg, R.A.Kammerer
compound source
Molecule: Agrin
Chain: A
Fragment: 195 A.A. C-Terminal Domain, G3 Domain
Engineered: Yes
Mutation: Yes
Other_details: B0 Isoform
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Agrn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgsthis, A Derivative Of Pgex-1 (Amersham)
methodSolution NMR
related structures by homologous chain: 1PZ9
Primary referenceModulation of agrin function by alternative splicing and Ca2+ binding., Stetefeld J, Alexandrescu AT, Maciejewski MW, Jenny M, Rathgeb-Szabo K, Schulthess T, Landwehr R, Frank S, Ruegg MA, Kammerer RA, Structure (Camb) 2004 Mar;12(3):503-15. PMID:15016366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (750 Kb) [Save to disk]
  • Biological Unit Coordinates (1q56.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1Q56
  • Original NMR restraints for 1Q56 from PDB
  • Retrieve 1Q56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q56 from S2C, [Save to disk]
    • View 1Q56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Q56
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q56, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q56a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q56_A] [1q56]
  • SWISS-PROT database: [P31696]
  • Domain organization of [AGRIN_CHICK] by SWISSPFAM
  • Domain found in 1Q56: [LamG ] by SMART
    • Other resources with information on 1Q56
  • Community annotation for 1Q56 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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