1QBY Dna date Apr 27, 1999
title The Solution Structure Of A Bay-Region 1r-Benz[A]Anthracene Adduct At The N6 Position Of Adenine Of An Oligodeoxynucleo Containing The Human N-Ras Codon 61 Sequence
authors Z.Li, H.Mao, H.Y.Kim, P.J.Tamura, C.M.Harris, T.M.Harris, M.P.Sto
compound source
Molecule: 5'-D(Cpgpgpapcp(Bza)Apapgpapapg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Cptptpcptptpgptpcpcp G)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Was Synthesized By Chemical Me
methodSolution NMR
ligand BZA enzyme
Primary referenceIntercalation of the (-)-(1R,2S,3R, 4S)-N6-[1-benz[a]anthracenyl]-2'-deoxyadenosyl adduct in an oligodeoxynucleotide containing the human N-ras codon 61 sequence., Li Z, Mao H, Kim HY, Tamura PJ, Harris CM, Harris TM, Stone MP, Biochemistry 1999 Mar 9;38(10):2969-81. PMID:10074349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1qby.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1QBY
  • CSU: Contacts of Structural Units for 1QBY
  • Original NMR restraints for 1QBY from PDB
  • Retrieve 1QBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QBY from S2C, [Save to disk]
    • View 1QBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QBY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QBY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qby] [1qby_A] [1qby_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1QBY
  • Community annotation for 1QBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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