1QF1 Hydrolase date Apr 06, 1999
title Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanylhepta Ala. Parameters For Zn-Bidentation Of Mercaptoacyldipeptide Metalloendopeptidase
authors J.F.Gaucher, M.Selkti, G.Tiraboschi, T.Prange, B.P.Roques, A.Tom M.C.Fournie-Zaluski
compound source
Molecule: Protein (Thermolysin)
Chain: A
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.165 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.310 93.310 131.820 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, DMS, TI1, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
related structures by homologous chain: 1FJ3, 1NPC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of alpha-mercaptoacyldipeptides in the thermolysin active site: structural parameters for a Zn monodentation or bidentation in metalloendopeptidases., Gaucher JF, Selkti M, Tiraboschi G, Prange T, Roques BP, Tomas A, Fournie-Zaluski MC, Biochemistry 1999 Sep 28;38(39):12569-76. PMID:10504225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1qf1.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1QF1
  • CSU: Contacts of Structural Units for 1QF1
  • Likely Quarternary Molecular Structure file(s) for 1QF1
  • Structure Factors (224 Kb)
  • Retrieve 1QF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QF1 from S2C, [Save to disk]
  • Re-refined 1qf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QF1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QF1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qf1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e1qf1, region F:358-474 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qf1_A] [1qf1]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 1QF1
  • Community annotation for 1QF1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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