1QGV	Transcription	date	May 06, 1999
title	Human Spliceosomal Protein U5-15kd
authors	K.Reuter, S.Nottrott, P.Fabrizio, R.Luehrmann, R.Ficner
compound		source
Molecule: Spliceosomal Protein U5-15kd Chain: A Fragment: Full-Length Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela Cellular_location: Nucleus Gene: U5-15kd Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap106 Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_vector: Pxc35 Expression_system_plasmid: Pxc35-15k Expression_system_gene: U5-15kd
symmetry	Space Group: P 21 21 2	R_factor 0.216 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.225 65.092 36.275 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
related structures	by homologous chain: 1PQN
Gene Ontology	Chain Function Process Component A
Primary reference	Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein., Reuter K, Nottrott S, Fabrizio P, Luhrmann R, Ficner R, J Mol Biol 1999 Nov 26;294(2):515-25. PMID:10610776

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (1qgv.pdb1.gz) 24 Kb CSU: Contacts of Structural Units for 1QGV Likely Quarternary Molecular Structure file(s) for 1QGV Structure Factors (187 Kb) Retrieve 1QGV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QGV from S2C, [Save to disk] Re-refined 1qgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QGV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QGV

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1QGV from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QGV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qgva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qgv_A] [1qgv] SWISS-PROT database: [P83876] Domain organization of [TXN4A_HUMAN] by SWISSPFAM Domain found in 1QGV: [DIM1 ] by SMART

Other resources with information on 1QGV

Community annotation for 1QGV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---