1QPM Viral Protein date May 26, 1999
title Nmr Structure Of The Mu Bacteriophage Repressor Dna-Binding
authors U.Ilangovan, J.M.Wojciak, K.M.Connolly, R.T.Clubb
compound source
Molecule: Protein (Mu Bacteriophage C Repressor Protein)
Chain: A
Fragment: Dna-Binding Domain
Engineered: Yes
 Organism_scientific: Enterobacteria Phage Mu
Organism_taxid: 10677
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
methodSolution NMR
related structures by homologous chain: 1G4D
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and functional studies of the Mu repressor DNA-binding domain., Ilangovan U, Wojciak JM, Connolly KM, Clubb RT, Biochemistry 1999 Jun 29;38(26):8367-76. PMID:10387082
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (1qpm.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1QPM
  • Retrieve 1QPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QPM from S2C, [Save to disk]
    • View 1QPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QPM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qpma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qpm] [1qpm_A]
  • SWISS-PROT database: [P06019]
  • Domain organization of [RPC1_BPMU] by SWISSPFAM
    • Other resources with information on 1QPM
  • Community annotation for 1QPM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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