1QSK Dna date Jun 22, 1999
title Nmr-Derived Solution Structure Of A Five-Adenine Bulge Loop Dna Duplex
authors U.Dornberger, A.Hillisch, F.Gollmick, H.Fritzsche, S.Diekmann
compound source
Molecule: 5'-D(Gpcpaptpcpgpapapapapapgpcptpap 3';
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Artificial Sequence

Molecule: 5'-D(Cpgptpapgpcpcpgpaptpgpcp)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Artificial Sequence
methodSolution NMR
Primary referenceSolution structure of a five-adenine bulge loop within a DNA duplex., Dornberger U, Hillisch A, Gollmick FA, Fritzsche H, Diekmann S, Biochemistry 1999 Sep 28;38(39):12860-8. PMID:10504256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (1qsk.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1QSK
  • Original NMR restraints for 1QSK from PDB
  • Retrieve 1QSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QSK from S2C, [Save to disk]
    • View 1QSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QSK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QSK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qsk_B] [1qsk] [1qsk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1QSK
  • Community annotation for 1QSK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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