1QYM	Oncoprotein	date	Sep 11, 2003
title	X-Ray Structure Of Human Gankyrin
authors	B.A.Manjasetty, C.Quedenau, V.Sievert, K.Buessow, F.Niesen, H.Del U.Heinemann
compound		source
Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 10 Chain: A Synonym: 26s Proteasome Regulatory Subunit P28, Gankyrin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Psmd10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Scs1 Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_vector: Pqtev Expression_system_plasmid: Psfep250a062
symmetry	Space Group: P 41 21 2	R_factor 0.187 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.373 116.373 74.399 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
related structures	by homologous chain: 1TR4, 1UOH
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray structure of human gankyrin, the product of a gene linked to hepatocellular carcinoma., Manjasetty BA, Quedenau C, Sievert V, Bussow K, Niesen F, Delbruck H, Heinemann U, Proteins 2004 Apr 1;55(1):214-7. PMID:14997555

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (1qym.pdb1.gz) 34 Kb CSU: Contacts of Structural Units for 1QYM Likely Quarternary Molecular Structure file(s) for 1QYM Structure Factors (237 Kb) Retrieve 1QYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QYM from S2C, [Save to disk] Re-refined 1qym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QYM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qyma_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qym_A] [1qym] SWISS-PROT database: [O75832] Domain organization of [PSD10_HUMAN] by SWISSPFAM Domain found in 1QYM: [ANK ] by SMART

Other resources with information on 1QYM

Community annotation for 1QYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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