1R2M Surface Active Protein date Sep 29, 2003
title Atomic Resolution Structure Of The Hfbii Hydrophobin: A Self-Assembling Amphiphile
authors J.Hakanpaa, A.Paananen, S.Askolin, T.Nakari-Setala, T.Parkkinen, M.Penttila, M.B.Linder, J.Rouvinen
compound source
Molecule: Hydrophobin II
Chain: A, B
Synonym: Hfbii
 Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
Strain: Qm9414
symmetry Space Group: C 1 2 1
R_factor 0.137 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.657 46.310 34.593 90.00 112.16 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAtomic resolution structure of the HFBII hydrophobin, a self-assembling amphiphile., Hakanpaa J, Paananen A, Askolin S, Nakari-Setala T, Parkkinen T, Penttila M, Linder MB, Rouvinen J, J Biol Chem 2004 Jan 2;279(1):534-9. Epub 2003 Oct 10. PMID:14555650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1r2m.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1r2m.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1R2M
  • CSU: Contacts of Structural Units for 1R2M
  • Likely Quarternary Molecular Structure file(s) for 1R2M
  • Structure Factors (1195 Kb)
  • Retrieve 1R2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R2M from S2C, [Save to disk]
  • Re-refined 1r2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R2M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1R2M 1R2MA 1R2MB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R2M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r2ma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r2mb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r2m_B] [1r2m] [1r2m_A]
  • SWISS-PROT database: [P79073]
  • Domain organization of [HYP2_TRIRE] by SWISSPFAM
    • Other resources with information on 1R2M
  • Community annotation for 1R2M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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