1R55 Hydrolase date Oct 09, 2003
title Crystal Structure Of The Catalytic Domain Of Human Adam 33
authors P.Orth, P.Reichert, W.Wang, W.W.Prosise, T.Yarosh-Tomaine, G.Hamm L.Xiao, U.A.Mirza, J.Zou, C.Strickland, S.S.Taremi, H.V.Le, V.Mad
compound source
Molecule: Adam 33
Chain: A
Synonym: A Disintegrin And Metalloproteinase Domain 33
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam33
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Eukaryotic Vector
Expression_system_plasmid: Pmtbipv5-Hisc
symmetry Space Group: C 2 2 21
R_factor 0.207 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.990 65.205 99.679 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand 097, CA, CL, MAN, NAG, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1R54
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the catalytic domain of human ADAM33., Orth P, Reichert P, Wang W, Prosise WW, Yarosh-Tomaine T, Hammond G, Ingram RN, Xiao L, Mirza UA, Zou J, Strickland C, Taremi SS, Le HV, Madison V, J Mol Biol 2004 Jan 2;335(1):129-37. PMID:14659745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1r55.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1R55
  • CSU: Contacts of Structural Units for 1R55
  • Likely Quarternary Molecular Structure file(s) for 1R55
  • Structure Factors (198 Kb)
  • Retrieve 1R55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R55 from S2C, [Save to disk]
  • Re-refined 1r55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R55
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R55, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r55a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r55_A] [1r55]
  • SWISS-PROT database: [Q9BZ11]
  • Domain organization of [ADA33_HUMAN] by SWISSPFAM
  • Other resources with information on 1R55
  • Community annotation for 1R55 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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