1R6G Hormone Growth Factor Receptor date Oct 15, 2003
title Crystal Structure Of The Thyroid Hormone Receptor Beta Ligan Domain In Complex With A Beta Selective Compound
authors J.J.Hangeland, T.Dejneka, T.J.Friends, P.Devasthale, K.Mellstrom J.Sandberg, M.Grynfarb, A.M.Doweyko, J.S.Sack, H.Einspahr, M.Far B.Husman, J.Ljunggren, K.Koehler, C.Sheppard, J.Malm, D.E.Ryono
compound source
Molecule: Thyroid Hormone Receptor Beta-1
Chain: A
Fragment: Ligand Binding Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thrb, Nr1a2, Erba2, Thr1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 31 2 1
R_factor 0.261 R_Free 0.347
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.556 68.556 129.170 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand 442 BindingDB enzyme
related structures by homologous chain: 1NQ1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThyroid receptor ligands. Part 2: Thyromimetics with improved selectivity for the thyroid hormone receptor beta., Hangeland JJ, Doweyko AM, Dejneka T, Friends TJ, Devasthale P, Mellstrom K, Sandberg J, Grynfarb M, Sack JS, Einspahr H, Farnegardh M, Husman B, Ljunggren J, Koehler K, Sheppard C, Malm J, Ryono DE, Bioorg Med Chem Lett 2004 Jul 5;14(13):3549-53. PMID:15177471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1r6g.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1R6G
  • CSU: Contacts of Structural Units for 1R6G
  • Likely Quarternary Molecular Structure file(s) for 1R6G
  • Structure Factors (62 Kb)
  • Retrieve 1R6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R6G from S2C, [Save to disk]
  • Re-refined 1r6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R6G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R6G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r6g_A] [1r6g]
  • SWISS-PROT database: [P10828]
  • Domain organization of [THB_HUMAN] by SWISSPFAM
  • Domain found in 1R6G: [HOLI ] by SMART
    • Other resources with information on 1R6G
  • Community annotation for 1R6G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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