1R8Y	Transferase	date	Oct 28, 2003
title	Crystal Structure Of Mouse Glycine N-Methyltransferase (Mono Form)
authors	S.Pakhomova, Z.Luka, C.Wagner, M.E.Newcomer
compound		source
Molecule: Glycine N-Methyltransferase Chain: A, B, C, D, E, F, G, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Gnmt Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet17b, Pmme
symmetry	Space Group: P 1 21 1	R_factor 0.222 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.980 108.300 119.010 90.00 93.71 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	BME	enzyme
related structures	by homologous chain: 1D2H
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Glycine N-methyltransferases: a comparison of the crystal structures and kinetic properties of recombinant human, mouse and rat enzymes., Pakhomova S, Luka Z, Grohmann S, Wagner C, Newcomer ME, Proteins 2004 Nov 1;57(2):331-7. PMID:15340920

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk] Biological Unit Coordinates (1r8y.pdb1.gz) 172 Kb Biological Unit Coordinates (1r8y.pdb2.gz) 171 Kb Biological Unit Coordinates (1r8y.pdb3.gz) 338 Kb Biological Unit Coordinates (1r8y.pdb4.gz) 337 Kb Biological Unit Coordinates (1r8y.pdb5.gz) 337 Kb LPC: Ligand-Protein Contacts for 1R8Y CSU: Contacts of Structural Units for 1R8Y Likely Quarternary Molecular Structure file(s) for 1R8Y Retrieve 1R8Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1R8Y from S2C, [Save to disk]

View 1R8Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1R8Y

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1R8Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r8ya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1r8yb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1r8yc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1r8yd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1r8ye_, region E [Jmol] [rasmolscript] [script source]     - Domain d1r8yf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1r8yg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1r8yh_, region H [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r8y_H] [1r8y_A] [1r8y_G] [1r8y_D] [1r8y] [1r8y_B] [1r8y_C] [1r8y_E] [1r8y_F] SWISS-PROT database: [Q9QXF8] Domain organization of [GNMT_MOUSE] by SWISSPFAM

Other resources with information on 1R8Y

Community annotation for 1R8Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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