1RC8	Transferase Dna	date	Nov 03, 2003
title	T4 Polynucleotide Kinase Bound To 5'-Gtcac-3' Ssdna
authors	J.H.Eastberg, J.Pelletier, B.L.Stoddard
compound		source
Molecule: 5'-D(Gptpcpapc)-3' Chain: B Engineered: Yes		Synthetic: Yes
Molecule: Polynucleotide Kinase Chain: A Synonym: Pnk, Polynucleotide 5'-Hydroxyl- Kinase Ec: 2.7.1.78 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Gene: Pset Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pall17
symmetry	Space Group: I 2 2 2	R_factor 0.230 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.170 92.061 123.385 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	ADP, CA, DMS, MSE	enzyme	Transferase E.C.2.7.1.78 BRENDA
related structures	by homologous chain: 1RPZ, 1RRC
Gene Ontology	Chain Function Process Component A deoxynucleotide 3'-phosphata...
Primary reference	Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase., Eastberg JH, Pelletier J, Stoddard BL, Nucleic Acids Res 2004 Jan 30;32(2):653-60 Print 2004. PMID:14754987

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1rc8.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 1RC8 CSU: Contacts of Structural Units for 1RC8 Likely Quarternary Molecular Structure file(s) for 1RC8 Structure Factors (86 Kb) Retrieve 1RC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RC8 from S2C, [Save to disk] Re-refined 1rc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RC8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RC8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RC8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rc8a2, region A:1-152 [Jmol] [rasmolscript] [script source]     - Domain d1rc8a1, region A:153-301 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rc8] [1rc8_A] [1rc8_B] SWISS-PROT database: [P06855] Domain organization of [KIPN_BPT4] by SWISSPFAM

Other resources with information on 1RC8

Community annotation for 1RC8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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