1RDQ	Transferase Transferase Inhibitor	date	Nov 05, 2003
title	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dep Protein Kinase
authors	J.Yang, L.F.Ten Eyck, N.H.Xuong, S.S.Taylor
compound		source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Su Chain: E Synonym: Pka C-Alpha Ec: 2.7.1.37 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Prkaca, Pkaca Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Camp-Dependent Protein Kinase Inhibitor, Alpha Fo Chain: I Fragment: Residues 5-24 Synonym: Pki-Alpha, Camp-Dependent Protein Kinase Inhibitor Musclebrain Isoform; Engineered: Yes		Synthetic: Yes Other_details: The Protein Was Chemically Synthesized. The Of The Protein Is Naturally Found In Mus Musculus (Mouse)
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.760 79.513 97.739 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.26 Å
ligand	ADP, ATP, GOL, MG, MRD, PO4, SEP, TPO	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1Q8U
Gene Ontology	Chain Function Process Component E I
Primary reference	Crystal structure of a cAMP-dependent protein kinase mutant at 1.26A: new insights into the catalytic mechanism., Yang J, Ten Eyck LF, Xuong NH, Taylor SS, J Mol Biol. 2004 Feb 13;336(2):473-87. PMID:14757059

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (1rdq.pdb1.gz) 136 Kb LPC: Ligand-Protein Contacts for 1RDQ CSU: Contacts of Structural Units for 1RDQ Likely Quarternary Molecular Structure file(s) for 1RDQ Structure Factors (1796 Kb) Retrieve 1RDQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RDQ from S2C, [Save to disk] Re-refined 1rdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RDQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RDQ

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1RDQ 1RDQE 1RDQI from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RDQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rdqe_, region E [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rdq_E] [1rdq] [1rdq_I] SWISS-PROT database: [P05132] Domain organization of [KAPCA_MOUSE] by SWISSPFAM Domains found in 1RDQ: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 1RDQ

Community annotation for 1RDQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---