1RJA Transferase date Nov 18, 2003
title Solution Structure And Backbone Dynamics Of The Nonreceptor Kinase Ptk6brk Sh2 Domain
authors E.Hong, J.Shin, W.Lee
compound source
Molecule: Tyrosine-Protein Kinase 6
Chain: A
Fragment: Sh2 Domain
Synonym: Breast Tumor Kinase, Tyrosine-Protein Kinase Brk,
Ec: 2.7.1.112
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pgex 4t-3
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Primary referenceSolution structure and backbone dynamics of the non-receptor protein-tyrosine kinase-6 Src homology 2 domain., Hong E, Shin J, Kim HI, Lee ST, Lee W, J Biol Chem 2004 Jul 9;279(28):29700-8. Epub 2004 Mar 31. PMID:15056653
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]
  • Biological Unit Coordinates (1rja.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1RJA
  • Original NMR restraints for 1RJA from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJA from S2C, [Save to disk]
    • View 1RJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RJA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjaa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rja_A] [1rja]
  • SWISS-PROT database: [Q13882]
  • Domain organization of [PTK6_HUMAN] by SWISSPFAM
  • Domain found in 1RJA: [SH2 ] by SMART
    • Other resources with information on 1RJA
  • Community annotation for 1RJA at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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