1RQY Dna date Dec 07, 2003
title 9-Amino-[N-(2-Dimethylamino)Proply]-Acridine-4-Carboxamide B D(Cgtacg)2
authors A.Adams, J.M.Guss, W.A.Denny, L.P.Wakelin
compound source
Molecule: 5'-D(Cpgptpapcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: C 2 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.745 52.124 40.745 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand 7AD, CO, MG enzyme
Primary referenceStructure of 9-amino-[N-(2-dimethylamino)propyl]acridine-4-carboxamide bound to d(CGTACG)(2): a comparison of structures of d(CGTACG)(2) complexed with intercalatorsin the presence of cobalt., Adams A, Guss JM, Denny WA, Wakelin LP, Acta Crystallogr D Biol Crystallogr 2004 May;60(Pt 5):823-8. Epub 2004 Apr, 21. PMID:15103127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1rqy.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1RQY
  • CSU: Contacts of Structural Units for 1RQY
  • Likely Quarternary Molecular Structure file(s) for 1RQY
  • Structure Factors (35 Kb)
  • Retrieve 1RQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RQY from S2C, [Save to disk]
  • Re-refined 1rqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rqy_B] [1rqy] [1rqy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1RQY
  • Community annotation for 1RQY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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