1RWV Hydrolase date Dec 17, 2003
title Crystal Structure Of Human Caspase-1 In Complex With 5-[5-(1 Carboxymethyl-2-Oxo-Propylcarbamoyl)-5-Phenyl-Pentylsulfamo Hydroxy-Benzoic Acid
authors M.J.Romanowski, M.T.Burdett, B.T.Fahr, T.O'Brien
compound source
Molecule: Interleukin-1 Beta Convertase
Chain: A
Fragment: Interleukin-1 Beta Convertase P20
Synonym: Il-1bc, Il-1 Beta Converting Enzyme, Ice, Interleu Converting Enzyme, P45, Caspase-1, Casp-1;
Ec: 3.4.22.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp1, Il1bc, Il1bce
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon+
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset

Molecule: Interleukin-1 Beta Convertase
Chain: B
Fragment: Interleukin-1 Beta Convertase P10
Synonym: Il-1bc, Il-1 Beta Converting Enzyme, Ice, Interleu Converting Enzyme, P45, Caspase-1, Casp-1;
Ec: 3.4.22.36
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp1, Il1bc, Il1bce
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon+
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset
symmetry Space Group: P 43 21 2
R_factor 0.198 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.048 63.048 161.056 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 5PH enzyme Hydrolase E.C.3.4.22.36 BRENDA
related structures by homologous chain: 1RWN, 1RWO
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1rwv.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1RWV
  • CSU: Contacts of Structural Units for 1RWV
  • Likely Quarternary Molecular Structure file(s) for 1RWV
  • Structure Factors (169 Kb)
  • Retrieve 1RWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RWV from S2C, [Save to disk]
  • Re-refined 1rwv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RWV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RWV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rwv.1, region A:,B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rwv] [1rwv_A] [1rwv_B]
  • SWISS-PROT database: [P29466]
  • Domain organization of [CASP1_HUMAN] by SWISSPFAM
  • Domain found in 1RWV: [CASc ] by SMART
  • Other resources with information on 1RWV
  • Community annotation for 1RWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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