1RYJ Structural Genomics, Unknown Function date Dec 22, 2003
title Solution Nmr Structure Of Protein Mth1743 From Methanobacter Thermoautotrophicum. Ontario Centre For Structural Proteomi Mth1743_1_70; Northeast Structural Genomics Consortium Targ
authors A.Yee, X.Chang, A.Pineda-Lucena, B.Wu, A.Semesi, B.Le, T.Ramelot, G S.Bhattacharyya, P.Gutierrez, A.Denisov, C.H.Lee, J.R.Cort, G.Ko J.Liao, G.Finak, L.Chen, D.Wishart, W.Lee, L.P.Mcintosh, K.Gehrin M.A.Kennedy, A.M.Edwards, C.H.Arrowsmith, Northeast Structural Consortium (Nesg)
compound source
Molecule: Unknown
Chain: A
Synonym: Hypothetical Protein Mth1743
Engineered: Yes
 Organism_scientific: Methanothermococcus Thermolithotrophic
Organism_taxid: 2186
Gene: Archaea
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
note 1RYJ supersedes 1JSB
Primary referenceAn NMR approach to structural proteomics., Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH, Proc Natl Acad Sci U S A 2002 Feb 19;99(4):1825-30. PMID:11854485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk]
  • Biological Unit Coordinates (1ryj.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1RYJ
  • Original NMR restraints for 1RYJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RYJ from S2C, [Save to disk]
    • View 1RYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RYJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RYJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ryja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ryj_A] [1ryj]
  • SWISS-PROT database: [O27775]
  • Domain organization of [O27775_METTH] by SWISSPFAM
    • Other resources with information on 1RYJ
  • Community annotation for 1RYJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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