OCA Atlas for 1S6X

1S6X

Toxin

date

Jan 28, 2004

title

Solution Structure Of Vstx

authors

H.J.Jung, Y.J.Eu, J.I.Kim

compound

source

Molecule: Kvap Channel
Chain: A
Synonym: Vstx, Gating Modifier Toxin
Engineered: Yes

Synthetic: Yes
Other_details: This Peptide Was Synthesized Chemically.

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure and lipid membrane partitioning of VSTx1, an inhibitor of the KvAP potassium channel., Jung HJ, Lee JY, Kim SH, Eu YJ, Shin SY, Milescu M, Swartz KJ, Kim JI, Biochemistry. 2005 Apr 26;44(16):6015-23. PMID:15835890

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]

Biological Unit Coordinates (1s6x.pdb1.gz) 9 Kb

CSU: Contacts of Structural Units for 1S6X

Original NMR restraints for 1S6X from PDB

Retrieve 1S6X in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1S6X from S2C, [Save to disk]

View 1S6X in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S6X

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1S6X, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s6x] [1s6x_A]

SWISS-PROT database: [P60980]

Domain organization of [VSTX1_GRARO] by SWISSPFAM

Other resources with information on 1S6X

Community annotation for 1S6X at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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