OCA Atlas for 1S79

1S79

Rna Binding Protein, Translation

date

Jan 29, 2004

title

Solution Structure Of The Central Rrm Of Human La Protein

authors

C.Alfano, D.Sanfelice, J.Babon, G.Kelly, A.Jacks, S.Curry, M.R.Con

compound

source

Molecule: Lupus La Protein
Chain: A
Fragment: Central Rrm
Synonym: Sjogren Syndrome Type B Antigen, Ss-B, La Ribonucl La Autoantigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ssb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector: Pet28

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein., Alfano C, Sanfelice D, Babon J, Kelly G, Jacks A, Curry S, Conte MR, Nat Struct Mol Biol 2004 Apr;11(4):323-9. Epub 2004 Mar 7. PMID:15004549

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk]

Biological Unit Coordinates (1s79.pdb1.gz) 29 Kb

CSU: Contacts of Structural Units for 1S79

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1S79 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1S79 from S2C, [Save to disk]

View 1S79 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S79

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1S79, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1s79a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s79] [1s79_A]

SWISS-PROT database: [P05455]

Domain organization of [LA_HUMAN] by SWISSPFAM

Domain found in 1S79: [RRM ] by SMART

Other resources with information on 1S79

Community annotation for 1S79 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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