1S9P Transcription date Feb 05, 2004
title Crystal Structure Of The Ligand-Binding Domain Of The Estrog Receptor Gamma In Complex With Diethylstilbestrol
authors H.Greschik, R.Flaig, J.P.Renaud, D.Moras
compound source
Molecule: Estrogen-Related Receptor Gamma
Chain: A, B, C, D
Synonym: Estrogen Receptor Related Protein 3, Err Gamma-2
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Esrrg, Nr3b3, Errg2, Err3, Kiaa0832
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.999 77.460 95.773 90.00 97.55 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand DES BindingDB enzyme
related structures by homologous chain: 1S9Q
Primary referenceStructural basis for the deactivation of the estrogen-related receptor gamma by diethylstilbestrol or 4-hydroxytamoxifen and determinants of selectivity., Greschik H, Flaig R, Renaud JP, Moras D, J Biol Chem 2004 May 24;. PMID:15161930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1s9p.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (1s9p.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (1s9p.pdb3.gz) 141 Kb
  • Biological Unit Coordinates (1s9p.pdb4.gz) 71 Kb
  • Biological Unit Coordinates (1s9p.pdb5.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1S9P
  • CSU: Contacts of Structural Units for 1S9P
  • Likely Quarternary Molecular Structure file(s) for 1S9P
  • Structure Factors (430 Kb)
  • Retrieve 1S9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S9P from S2C, [Save to disk]
  • Re-refined 1s9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S9P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S9P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s9pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s9pb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1s9pc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1s9pd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s9p_C] [1s9p_B] [1s9p] [1s9p_D] [1s9p_A]
  • SWISS-PROT database: [P62508]
  • Domain organization of [ERR3_HUMAN] by SWISSPFAM
  • Domain found in 1S9P: [HOLI ] by SMART
    • Other resources with information on 1S9P
  • Community annotation for 1S9P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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