OCA Atlas for 1SDR

1SDR

Rna

date

Dec 11, 1994

title

Crystal Structure Of An Rna Dodecamer Containing The Escheri Shine-Dalgarno Sequence

authors

H.Schindelin, M.Zhang, R.Bald, J.P.Fuerste, V.A.Erdmann, U.Heine

compound

source

Molecule: Rna (5'-R(Upapapgpgpapgpgpupgpapu)-3'
Chain: A, C
Engineered: Yes

Synthetic: Yes

Molecule: Rna (5'-R(Apupcpapcpcpupcpcpupupa)-3'
Chain: B, D
Engineered: Yes

Synthetic: Yes

symmetry

Space Group: P 1

R_factor

0.195

R_Free

NULL

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
27.690	30.900	41.980	90.92	103.63	113.81

method

X-Ray Diffraction

resolution

2.60 Å

Primary reference

Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence., Schindelin H, Zhang M, Bald R, Furste JP, Erdmann VA, Heinemann U, J Mol Biol 1995 Jun 9;249(3):595-603. PMID:7540215

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]

Biological Unit Coordinates (1sdr.pdb1.gz) 11 Kb

Biological Unit Coordinates (1sdr.pdb2.gz) 11 Kb

CSU: Contacts of Structural Units for 1SDR

Likely Quarternary Molecular Structure file(s) for 1SDR

Structure Factors (28 Kb)

Retrieve 1SDR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1SDR from S2C, [Save to disk]

Re-refined 1sdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SDR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SDR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1SDR, from MSDmotif at EBI

Structure summary from SCOR (Structural Classification of RNA)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1sdr_C] [1sdr_B] [1sdr_A] [1sdr_D] [1sdr]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 1SDR

Community annotation for 1SDR at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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