1SEF Structural Genomics, Unknown Function date Feb 17, 2004
title Crystal Structure Of Cupin Domain Protein Ef2996 From Entero Faecalis
authors A.A.Fedorov, E.V.Fedorov, S.C.Almo, S.K.Burley, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A
Engineered: Yes
Other_details: The Conserved Hypothetical Protein With Unkn Function
 Organism_scientific: Enterococcus Faecalis
Organism_taxid: 226185
Strain: V583
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.208 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.984 104.984 159.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1sef.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1sef.pdb2.gz) 331 Kb
  • CSU: Contacts of Structural Units for 1SEF
  • Likely Quarternary Molecular Structure file(s) for 1SEF
  • Structure Factors (415 Kb)
  • Retrieve 1SEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SEF from S2C, [Save to disk]
  • Re-refined 1sef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SEF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SEF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sefa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sef_A] [1sef]
  • SWISS-PROT database: [Q82ZQ3]
  • Domain organization of [Q82ZQ3_ENTFA] by SWISSPFAM
    • Other resources with information on 1SEF
  • Community annotation for 1SEF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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