1STU Double Stranded Rna Binding Domain date May 16, 1995
title Double Stranded Rna Binding Domain
authors M.Bycroft
compound source
Molecule: Maternal Effect Protein Staufen
Chain: A
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Organ: Fruit
Gene: Double Stranded Rna Binding Do
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pget2t
Expression_system_gene: Double Stranded Rna Binding Do
methodSolution NMR
related structures by homologous chain: 1EKZ
Primary referenceNMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5., Bycroft M, Grunert S, Murzin AG, Proctor M, St Johnston D, EMBO J 1995 Jul 17;14(14):3563-71. PMID:7628456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (1stu.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1STU
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1STU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1STU from S2C, [Save to disk]
    • View 1STU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1STU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1STU, from MSDmotif at EBI
  • Genome occurence of 1STU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1stu__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1stu_A] [1stu]
  • SWISS-PROT database: [P25159]
  • Domain organization of [STAU_DROME] by SWISSPFAM
  • Domain found in 1STU: [DSRM ] by SMART
    • Other resources with information on 1STU
  • Community annotation for 1STU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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