1T0G Structural Genomics, Unknown Function date Apr 08, 2004
title Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana H Cytochrome B5 Like Fold
authors J.Song, D.A.Vinarov, E.M.Tyler, M.N.Shahan, R.C.Tyler, J.L.Markle For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Cytochrome B5 Domain-Containing Protein
Chain: A
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At2g24940.1
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu(N)His6
Other_details: Wheat Germ Cell-Free, In Vitro Expression
methodSolution NMR
note 1T0G is a representative structure and supersedes 1SV7
related structures by homologous chain: 1J03
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold., Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL, J Biomol NMR 2004 Oct;30(2):215-8. PMID:15702529
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (558 Kb) [Save to disk]
  • Biological Unit Coordinates (1t0g.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1T0G
  • Original NMR restraints for 1T0G from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1T0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T0G from S2C, [Save to disk]
    • View 1T0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T0G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T0G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t0ga_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t0g_A] [1t0g]
  • SWISS-PROT database: [Q9SK39]
  • Domain organization of [SBP3_ARATH] by SWISSPFAM
  • Domain found in 1T0G: [Cyt-b5 ] by SMART
    • Other resources with information on 1T0G
  • Community annotation for 1T0G at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science