1T0O Hydrolase date Apr 12, 2004
title The Structure Of Alpha-Galactosidase From Trichoderma Reesei With Beta-D-Galactose
authors A.M.Golubev, R.A.P.Nagem, J.R.Brandao Neto, K.N.Neustroev, E.V.E A.A.Kulminskaya, K.A.Shabalin, A.N.Savel'Ev, I.Polikarpov
compound source
Molecule: Alpha-Galactosidase
Chain: A
Ec: 3.2.1.22
 Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
symmetry Space Group: P 21 21 21
R_factor 0.151 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.834 58.313 153.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand BMA, GAL, MAN, NAG enzyme Hydrolase E.C.3.2.1.22 BRENDA
related structures by homologous chain: 1SZN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of alpha-galactosidase from Trichoderma reesei and its complex with galactose: implications for catalytic mechanism., Golubev AM, Nagem RA, Brandao Neto JR, Neustroev KN, Eneyskaya EV, Kulminskaya AA, Shabalin KA, Savel'ev AN, Polikarpov I, J Mol Biol 2004 May 28;339(2):413-22. PMID:15136043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1t0o.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1T0O
  • CSU: Contacts of Structural Units for 1T0O
  • Likely Quarternary Molecular Structure file(s) for 1T0O
  • Structure Factors (202 Kb)
  • Retrieve 1T0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T0O from S2C, [Save to disk]
  • Re-refined 1t0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T0O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T0O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t0oa2, region A:1-314 [Jmol] [rasmolscript] [script source]
        - Domain d1t0oa1, region A:315-417 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t0o_A] [1t0o]
  • SWISS-PROT database: [Q92456]
  • Domain organization of [Q92456_TRIRE] by SWISSPFAM
    • Other resources with information on 1T0O
  • Community annotation for 1T0O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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