1T3K Hydrolase date Apr 27, 2004
title Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine Phos Arabidopsis Thaliana
authors I.Landrieu, M.Da Costa, L.De Veylder, F.Dewitte, K.Vandepoele, S. J.M.Wieruszeski, J.D.Faure, D.Inze, G.Lippens
compound source
Molecule: Dual-Specificity Tyrosine Phosphatase
Chain: A
Synonym: Arath Cdc25
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Cdc25
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • phosphoprotein phosphatase a...
  • protein tyrosine phosphatase...


    • Primary referenceA small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana., Landrieu I, Da Costa M, De Veylder L, Dewitte F, Vandepoele K, Hassan S, Wieruszeski JM, Faure JD, Van Montagu M, Inze D, Lippens G, Proc Natl Acad Sci U S A 2004 Sep 7;101(36):13380-5. Epub 2004 Aug 25. PMID:15329414
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (689 Kb) [Save to disk]
  • Biological Unit Coordinates (1t3k.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1T3K
  • CSU: Contacts of Structural Units for 1T3K
  • Original NMR restraints for 1T3K from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1T3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T3K from S2C, [Save to disk]
    • View 1T3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T3K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T3K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t3ka_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t3k_A] [1t3k]
  • SWISS-PROT database: [Q8GY31]
  • Domain organization of [CDC25_ARATH] by SWISSPFAM
  • Domain found in 1T3K: [RHOD ] by SMART
    • Other resources with information on 1T3K
  • Community annotation for 1T3K at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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