1T4C Formyl-CoA Transferase in complex with Oxalyl-CoA date
authors Ricagno, S., Jonsson, S., Richards, N.G., Lindqvist, Y.
compound source
symmetry
R_factor
R_Free 0.27308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.61
ligand COA, OXD, OXX enzyme
related structures by homologous chain: 1P5R
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes., Jonsson S, Ricagno S, Lindqvist Y, Richards NG, J Biol Chem 2004 Aug 20;279(34):36003-12. Epub 2004 Jun 21. PMID:15213226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (1t4c.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 1T4C
  • CSU: Contacts of Structural Units for 1T4C
  • Likely Quarternary Molecular Structure file(s) for 1T4C
  • Structure Factors (238 Kb)
  • Retrieve 1T4C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T4C from S2C, [Save to disk]
  • Re-refined 1t4c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T4C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T4C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T4C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t4ca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t4cb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t4c_A] [1t4c_B] [1t4c]
  • SWISS-PROT database: [O06644]
  • Domain organization of [FCTA_OXAFO] by SWISSPFAM
  • Other resources with information on 1T4C
  • Community annotation for 1T4C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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