1T6S Structural Genomics, Unknown Function date May 07, 2004
title Crystal Structure Of A Conserved Hypothetical Protein From C Tepidum
authors J.S.Kim, D.H.Shin, R.Kim, S.H.Kim, Berkeley Structural Genomics (Bsgc)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Chlorobium Tepidum Tls
Organism_taxid: 194439
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21d
Expression_system_plasmid: Pb3.1371b
symmetry Space Group: P 62
R_factor 0.216 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.420 69.420 117.990 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning., Kim JS, Shin DH, Pufan R, Huang C, Yokota H, Kim R, Kim SH, Proteins. 2006 Feb 1;62(2):322-8. PMID:16294331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1t6s.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (1t6s.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (1t6s.pdb3.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1T6S
  • CSU: Contacts of Structural Units for 1T6S
  • Likely Quarternary Molecular Structure file(s) for 1T6S
  • Structure Factors (191 Kb)
  • Retrieve 1T6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T6S from S2C, [Save to disk]
  • Re-refined 1t6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T6S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T6S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t6sa1, region A:1-85 [Jmol] [rasmolscript] [script source]
        - Domain d1t6sa2, region A:86-162 [Jmol] [rasmolscript] [script source]
        - Domain d1t6sb1, region B:1-85 [Jmol] [rasmolscript] [script source]
        - Domain d1t6sb2, region B:86-162 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t6s] [1t6s_B] [1t6s_A]
  • SWISS-PROT database: [Q8KF54]
  • Domain organization of [Q8KF54_CHLTE] by SWISSPFAM
    • Other resources with information on 1T6S
  • Community annotation for 1T6S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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