1T9Q Electron Transport date May 18, 2004
title Crystal Structure Of V44l Cp Rubredoxin
authors I.Y.Park, M.K.Eidsness, I.J.Lin, E.B.Gebel, B.Youn, J.L.Harley, T.E.Machonkin, R.O.Frederick, J.L.Markley, E.T.Smith, T.Ichiye,
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Rd
Engineered: Yes
Mutation: Yes
 Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.206 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.770 63.770 32.760 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand FE enzyme
related structures by homologous chain: 1R0H, 2RDV
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceCrystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential., Park IY, Eidsness MK, Lin IJ, Gebel EB, Youn B, Harley JL, Machonkin TE, Frederick RO, Markley JL, Smith ET, Ichiye T, Kang C, Proteins 2004 Sep 20;57(3):618. PMID:15382226
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1t9q.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1T9Q
  • CSU: Contacts of Structural Units for 1T9Q
  • Likely Quarternary Molecular Structure file(s) for 1T9Q
  • Structure Factors (41 Kb)
  • Retrieve 1T9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T9Q from S2C, [Save to disk]
  • Re-refined 1t9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T9Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T9Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t9qa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t9q_A] [1t9q]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
    • Other resources with information on 1T9Q
  • Community annotation for 1T9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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