1TEE Transferase date May 25, 2004
title Crystal Structure Of C205f Mutant Of Pks18 From Mycobacteriu Tuberculosis
authors R.Sankaranarayanan, V.M.Shanmugam, R.Rukmini
compound source
Molecule: Pks18
Chain: A, B, C, D
Synonym: Polyketide Synthase
Ec: 2.3.1.74
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Pks18
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21c
symmetry Space Group: P 1
R_factor 0.221 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.952 80.431 99.975 108.15 93.14 103.88
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.3.1.74 BRENDA
related structures by homologous chain: 1TED
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA novel tunnel in mycobacterial type III polyketide synthase reveals the structural basis for generating diverse metabolites., Sankaranarayanan R, Saxena P, Marathe UB, Gokhale RS, Shanmugam VM, Rukmini R, Nat Struct Mol Biol 2004 Sep;11(9):894-900. Epub 2004 Aug 1. PMID:15286723
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (1tee.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (1tee.pdb2.gz) 108 Kb
  • CSU: Contacts of Structural Units for 1TEE
  • Likely Quarternary Molecular Structure file(s) for 1TEE
  • Structure Factors (308 Kb)
  • Retrieve 1TEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TEE from S2C, [Save to disk]
  • Re-refined 1tee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TEE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TEE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1teea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1teeb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1teec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1teed_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tee_B] [1tee] [1tee_C] [1tee_D] [1tee_A]
  • SWISS-PROT database: [Q7D8I1]
  • Domain organization of [Q7D8I1_MYCTU] by SWISSPFAM
  • Other resources with information on 1TEE
  • Community annotation for 1TEE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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