1TP7	Transferase	date	Jun 15, 2004
title	Crystal Structure Of The Rna-Dependent Rna Polymerase From Human Rhinovirus 16
authors	T.C.Appleby, H.Luecke, J.H.Shim, J.Z.Wu, I.W.Cheney, W.Zhong, L.Vogeley, Z.Hong, N.Yao
compound		source
Molecule: Genome Polyprotein Chain: A, B, C, D Fragment: Rna-Directed Rna Polymerase (Residues 1694-2153) Synonym: P3d Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Human Rhinovirus 16 Organism_taxid: 31708 Gene: 3d Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
symmetry	Space Group: P 1 21 1	R_factor 0.243 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.428 118.890 183.107 90.00 96.06 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	DMX, MSE, SO4	enzyme	Transferase E.C.2.7.7.48 BRENDA
related structures	by homologous chain: 1XR6, 1XR7
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of complete rhinovirus RNA polymerase suggests front loading of protein primer., Appleby TC, Luecke H, Shim JH, Wu JZ, Cheney IW, Zhong W, Vogeley L, Hong Z, Yao N, J Virol 2005 Jan;79(1):277-88. PMID:15596823

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk] Biological Unit Coordinates (1tp7.pdb1.gz) 81 Kb Biological Unit Coordinates (1tp7.pdb2.gz) 81 Kb Biological Unit Coordinates (1tp7.pdb3.gz) 80 Kb Biological Unit Coordinates (1tp7.pdb4.gz) 78 Kb LPC: Ligand-Protein Contacts for 1TP7 CSU: Contacts of Structural Units for 1TP7 Likely Quarternary Molecular Structure file(s) for 1TP7 Retrieve 1TP7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TP7 from S2C, [Save to disk]

View 1TP7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TP7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TP7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tp7_B] [1tp7_A] [1tp7_C] [1tp7_D] [1tp7] SWISS-PROT database: [Q82122] Domain organization of [POLG_HRV16] by SWISSPFAM

Other resources with information on 1TP7

Community annotation for 1TP7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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