1TVC Oxidoreductase date Jun 29, 2004
title Fad And Nadh Binding Domain Of Methane Monooxygenase Reducta Methylococcus Capsulatus (Bath)
authors L.L.Chatwood, J.Mueller, J.D.Gross, G.Wagner, S.J.Lippard
compound source
Molecule: Methane Monooxygenase Component C
Chain: A
Fragment: C-Terminal Domain
Synonym: Methane Hydroxylase; Methane Monooxygenase Reducta
Ec: 1.14.13.25
Engineered: Yes
 Organism_scientific: Methylococcus Capsulatus
Organism_taxid: 414
Gene: Mmoc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfad21
methodSolution NMR
ligand FDA enzyme Oxidoreductase E.C.1.14.13.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the flavin domain from soluble methane monooxygenase reductase from Methylococcus capsulatus (Bath)., Chatwood LL, Muller J, Gross JD, Wagner G, Lippard SJ, Biochemistry 2004 Sep 28;43(38):11983-91. PMID:15379538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (659 Kb) [Save to disk]
  • Biological Unit Coordinates (1tvc.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 1TVC
  • CSU: Contacts of Structural Units for 1TVC
  • Original NMR restraints for 1TVC from PDB
  • Retrieve 1TVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TVC from S2C, [Save to disk]
    • View 1TVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TVC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TVC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tvca2, region A:111-251 [Jmol] [rasmolscript] [script source]
        - Domain d1tvca1, region A:2-110 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tvc_A] [1tvc]
  • SWISS-PROT database: [P22868]
  • Domain organization of [MMOC_METCA] by SWISSPFAM
    • Other resources with information on 1TVC
  • Community annotation for 1TVC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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