1U2F Rna Binding Protein date May 26, 1999
title Solution Structure Of The First Rna-Binding Domain Of Hu2af6
authors T.Ito, Y.Muto, M.R.Green, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Protein (Splicing Factor U2af 65 Kd Subunit)
Chain: A
Fragment: First Rna-Binding Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk7
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65))., Ito T, Muto Y, Green MR, Yokoyama S, EMBO J 1999 Aug 16;18(16):4523-34. PMID:10449418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1u2f.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1U2F
  • Original NMR restraints for 1U2F from PDB
  • Retrieve 1U2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U2F from S2C, [Save to disk]
    • View 1U2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U2F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U2F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u2fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u2f_A] [1u2f]
  • SWISS-PROT database: [P26368]
  • Domain organization of [U2AF2_HUMAN] by SWISSPFAM
  • Domain found in 1U2F: [RRM ] by SMART
    • Other resources with information on 1U2F
  • Community annotation for 1U2F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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