1U2R Translation date Jul 20, 2004
title Crystal Structure Of Adp-Ribosylated Ribosomal Translocase F Saccharomyces Cerevisiae
authors R.Jorgensen, S.P.Yates, J.Nilsson, G.A.Prentice, D.J.Teal, A.R.Me G.R.Andersen
compound source
Molecule: Elongation Factor 2
Chain: A
Synonym: Ef-2, Adpr-Ef2
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 21 2
R_factor 0.227 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.725 151.002 65.172 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand APR, DDE, GDP, MG, SO1 enzyme
related structures by homologous chain: 1N0U, 1ZM9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of ADP-ribosylated ribosomal translocase from Saccharomyces cerevisiae., Jorgensen R, Yates SP, Teal DJ, Nilsson J, Prentice G, Merrill AR, Andersen GR, J Biol Chem 2004 Aug 16;. PMID:15316019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1u2r.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1U2R
  • CSU: Contacts of Structural Units for 1U2R
  • Likely Quarternary Molecular Structure file(s) for 1U2R
  • Structure Factors (289 Kb)
  • Retrieve 1U2R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U2R from S2C, [Save to disk]
  • Re-refined 1u2r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U2R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U2R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U2R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u2ra2, region A:3-343 [Jmol] [rasmolscript] [script source]
        - Domain d1u2ra1, region A:344-481 [Jmol] [rasmolscript] [script source]
        - Domain d1u2ra4, region A:482-560 [Jmol] [rasmolscript] [script source]
        - Domain d1u2ra3, region A:561-725 [Jmol] [rasmolscript] [script source]
        - Domain d1u2ra5, region A:726-842 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u2r] [1u2r_A]
  • SWISS-PROT database: [P32324]
  • Domain organization of [EF2_YEAST] by SWISSPFAM
  • Domains found in 1U2R: [EFG_C] [EFG_IV ] by SMART
    • Other resources with information on 1U2R
  • Community annotation for 1U2R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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