1UCS Antifreeze Protein date Apr 21, 2003
title Type III Antifreeze Protein Rd1 From An Antarctic Eel Pout
authors T.P.Ko, H.Robinson, Y.G.Gao, C.H.C.Cheng, A.L.Devries, A.H.J.
compound source
Molecule: Antifreeze Peptide Rd1
Chain: A
Synonym: Type III Antifreeze Protein Rd1
Organism_scientific: Lycodichthys Dearborni
Organism_common: Antarctic Eel Pout
Organism_taxid: 8201
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.501 39.502 44.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.62 Å
note 1UCS is a representative structure
related structures by homologous chain: 1HG7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-A resolution reveals structural microheterogeneity of protein and solvation., Ko TP, Robinson H, Gao YG, Cheng CH, DeVries AL, Wang AH, Biophys J 2003 Feb;84(2 Pt 1):1228-37. PMID:12547803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1ucs.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1UCS
  • Likely Quarternary Molecular Structure file(s) for 1UCS
  • Structure Factors (1308 Kb)
  • Retrieve 1UCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UCS from S2C, [Save to disk]
  • Re-refined 1ucs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UCS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1UCS from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UCS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ucsa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ucs_A] [1ucs]
  • SWISS-PROT database: [P35751]
  • Domain organization of [ANP1_RHIDE] by SWISSPFAM
  • Other resources with information on 1UCS
  • Community annotation for 1UCS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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