OCA Atlas for 1UHR

1UHR

Gene Regulation

date

Jul 09, 2003

title

Solution Structure Of The Swib Domain Of Mouse Brg1-Associat 60a

authors

K.Yamada, K.Saito, N.Nameki, M.Inoue, S.Koshiba, M.Shirouzu, T.Ter T.Yabuki, M.Aoki, T.Matsuda, E.Seki, H.Hirota, M.Yoshida, A.Tanak T.Osanai, T.Arakawa, P.Carninci, J.Kawai, Y.Hayashizaki, T.Kigaw S.Yokoyama, Riken Structural Genomicsproteomics Initiative

compound

source

Molecule: Swisnf Related, Matrix Associated, Actin Depende Regulator Of Chromatin Subfamily D Member 1;
Chain: A
Fragment: Swib Domain
Synonym: Brg1-Associated Factor 60a, Baf60a
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 0710008a09
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P020826-29
Other_details: Cell-Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]

Biological Unit Coordinates (1uhr.pdb1.gz) 25 Kb

CSU: Contacts of Structural Units for 1UHR

Retrieve 1UHR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1UHR from S2C, [Save to disk]

View 1UHR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UHR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1UHR, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1uhra_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uhr] [1uhr_A]

SWISS-PROT database: [Q61466]

Domain organization of [SMRD1_MOUSE] by SWISSPFAM

Domain found in 1UHR: [SWIB ] by SMART

Other resources with information on 1UHR

Community annotation for 1UHR at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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