1UKK Oxidoreductase date Aug 24, 2003
title Structure Of Osmotically Inducible Protein C From Thermus Th
authors P.H.Rehse, S.Kuramitsu, S.Yokoyama, M.Miyano, T.H.Tahirov, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Osmotically Inducible Protein C
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 1
R_factor 0.178 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.580 40.950 48.140 76.93 74.04 64.05
method X-Ray Diffractionresolution 1.60 Å
ligand CSD, MSE, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • Primary referenceCrystallographic structure and biochemical analysis of the Thermus thermophilus osmotically inducible protein C., Rehse PH, Ohshima N, Nodake Y, Tahirov TH, J Mol Biol 2004 May 14;338(5):959-68. PMID:15111059
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1ukk.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1UKK
  • CSU: Contacts of Structural Units for 1UKK
  • Likely Quarternary Molecular Structure file(s) for 1UKK
  • Structure Factors (191 Kb)
  • Retrieve 1UKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UKK from S2C, [Save to disk]
  • Re-refined 1ukk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UKK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UKK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ukka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ukkb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ukk_B] [1ukk] [1ukk_A]
  • SWISS-PROT database: [P84124]
  • Domain organization of [P84124_THETH] by SWISSPFAM
    • Other resources with information on 1UKK
  • Community annotation for 1UKK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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