1UMI Ligase date Oct 01, 2003
title Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
authors T.Mizushima, T.Hirao, Y.Yoshida, S.J.Lee, T.Chiba, K.Iwai, Y.Yamag K.Kato, T.Tsukihara, K.Tanaka
compound source
Molecule: F-Box Only Protein 2
Chain: A
Fragment: Sbd Domain
Synonym: Fbs1
Ec: 6.3.2.19
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Mouse
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.197 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.806 63.806 147.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand NAG, NDG enzyme Ligase E.C.6.3.2.19 BRENDA
related structures by homologous chain: 1UMH
Primary referenceStructural basis of sugar-recognizing ubiquitin ligase., Mizushima T, Hirao T, Yoshida Y, Lee SJ, Chiba T, Iwai K, Yamaguchi Y, Kato K, Tsukihara T, Tanaka K, Nat Struct Mol Biol 2004 Apr;11(4):365-70. Epub 2004 Feb 29. PMID:14990996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1umi.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1UMI
  • CSU: Contacts of Structural Units for 1UMI
  • Likely Quarternary Molecular Structure file(s) for 1UMI
  • Retrieve 1UMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMI from S2C, [Save to disk]
    • View 1UMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UMI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1umia_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1umi] [1umi_A]
  • SWISS-PROT database: [Q80UW2]
  • Domain organization of [FBX2_MOUSE] by SWISSPFAM
  • Domain found in 1UMI: [FBA ] by SMART
    • Other resources with information on 1UMI
  • Community annotation for 1UMI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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