1UP2 Hydrolase date Sep 26, 2003
title Structure Of The Endoglucanase Cel6 From Mycobacterium Tuber Complex With Glucose-Isofagomine At 1.9 Angstrom
authors A.Varrot, S.Leydier, G.Pell, H.J.Gilbert, G.J.Davies
compound source
Molecule: Cela1 Protein
Chain: A
Fragment: Catalytic Domain, Residues 88-380
Synonym: Endoglucanase, Cela, Cel6
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Origami
Expression_system_plasmid: Pet22b
Other_details: Synthetic Gene
symmetry Space Group: P 21 21 2
R_factor 0.132 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.788 92.830 46.695 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PG, ACT, BGC, IFM, MHO, SO4 enzyme
related structures by homologous chain: 1UP0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMycobacterium tuberculosis strains possess functional cellulases., Varrot A, Leydier S, Pell G, Macdonald JM, Stick RV, Henrissat B, Gilbert HJ, Davies GJ, J Biol Chem. 2005 May 27;280(21):20181-4. Epub 2005 Apr 11. PMID:15824123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1up2.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1UP2
  • CSU: Contacts of Structural Units for 1UP2
  • Likely Quarternary Molecular Structure file(s) for 1UP2
  • Structure Factors (499 Kb)
  • Retrieve 1UP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UP2 from S2C, [Save to disk]
  • Re-refined 1up2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1UP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UP2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UP2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1up2a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1up2_A] [1up2]
  • SWISS-PROT database: [Q79G13]
  • Domain organization of [Q79G13_MYCTU] by SWISSPFAM
    • Other resources with information on 1UP2
  • Community annotation for 1UP2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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