1UW8	Lyase	date	Feb 02, 2004
title	Crystal Structure Of Oxalate Decarboxylase
authors	V.J.Just, C.E.M.Stevenson, L.Bowater, A.Tanner, D.M.Lawson, S.Bor
compound		source
Molecule: Oxalate Decarboxylase Oxdc Chain: A Synonym: Oxdc Ec: 4.1.1.2 Engineered: Yes Other_details: Formerly Known As Yvrk		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Strain: 168 Atcc: 23857 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pt7.5 Expression_system_plasmid: Pat1
symmetry	Space Group: H 3 2	R_factor 0.127 R_Free 0.158
crystal cell	length a length b length c angle alpha angle beta angle gamma 154.663 154.663 122.822 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MN, TRS	enzyme	Lyase E.C.4.1.1.2 BRENDA
related structures	by homologous chain: 1L3J
Gene Ontology	Chain Function Process Component A
Primary reference	A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site., Just VJ, Stevenson CE, Bowater L, Tanner A, Lawson DM, Bornemann S, J Biol Chem 2004 May 7;279(19):19867-74. Epub 2004 Feb 10. PMID:14871895

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (1uw8.pdb1.gz) 393 Kb LPC: Ligand-Protein Contacts for 1UW8 CSU: Contacts of Structural Units for 1UW8 Likely Quarternary Molecular Structure file(s) for 1UW8 Structure Factors (587 Kb) Retrieve 1UW8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UW8 from S2C, [Save to disk] Re-refined 1uw8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UW8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UW8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UW8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uw8a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uw8_A] [1uw8] SWISS-PROT database: [O34714] Domain organization of [OXDC_BACSU] by SWISSPFAM Domain found in 1UW8: [Cupin_1 ] by SMART

Other resources with information on 1UW8

Community annotation for 1UW8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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