1V0O Transferase date Mar 31, 2004
title Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex
authors S.Holton, A.Merckx, D.Burgess, C.Doerig, M.Noble, J.Endicott
compound source
Molecule: Cell Division Control Protein 2 Homolog
Chain: A, B
Synonym: Pfpk5
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 5833
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.23262 R_Free 0.28178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.562 88.277 63.857 90.00 97.33 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand INR enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1OB3, 1V0P
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cyclin-dependent protein ser...


  • Primary referenceStructures of P. falciparum PfPK5 test the CDK regulation paradigm and suggest mechanisms of small molecule inhibition., Holton S, Merckx A, Burgess D, Doerig C, Noble M, Endicott J, Structure (Camb) 2003 Nov;11(11):1329-37. PMID:14604523
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1v0o.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1v0o.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1V0O
  • CSU: Contacts of Structural Units for 1V0O
  • Likely Quarternary Molecular Structure file(s) for 1V0O
  • Structure Factors (712 Kb)
  • Retrieve 1V0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V0O from S2C, [Save to disk]
  • Re-refined 1v0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V0O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V0O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v0oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v0ob_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v0o_B] [1v0o] [1v0o_A]
  • SWISS-PROT database: [Q07785]
  • Domain organization of [CDC2H_PLAFK] by SWISSPFAM
  • Domain found in 1V0O: [S_TKc ] by SMART
  • Other resources with information on 1V0O
  • Community annotation for 1V0O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science