1V4G Ligase date Nov 13, 2003
title Crystal Structure Of Gamma-Glutamylcysteine Synthetase From Escherichia Coli B
authors T.Hibi, H.Nii, T.Nakatsu, H.Kato, J.Hiratake, J.Oda
compound source
Molecule: Glutamate--Cysteine Ligase
Chain: A, B, C, D
Synonym: Gamma-Glutamylcysteine Synthetase, Gamma-Ecs, Gcs
Ec: 6.3.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Gsh-I
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
symmetry Space Group: H 3
R_factor 0.206 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
326.818 326.818 104.726 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand FME enzyme Ligase E.C.6.3.2.2 BRENDA
related structures by homologous chain: 1VA6
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis., Hibi T, Nii H, Nakatsu T, Kimura A, Kato H, Hiratake J, Oda J, Proc Natl Acad Sci U S A 2004 Oct 19;101(42):15052-7. Epub 2004 Oct 11. PMID:15477603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (1v4g.pdb1.gz) 318 Kb
  • LPC: Ligand-Protein Contacts for 1V4G
  • CSU: Contacts of Structural Units for 1V4G
  • Likely Quarternary Molecular Structure file(s) for 1V4G
  • Structure Factors (1253 Kb)
  • Retrieve 1V4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V4G from S2C, [Save to disk]
  • Re-refined 1v4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V4G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V4G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v4ga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1v4gb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1v4gc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1v4gd_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v4g] [1v4g_C] [1v4g_B] [1v4g_D] [1v4g_A]
  • SWISS-PROT database: [P0A6W9]
  • Domain organization of [GSH1_ECOLI] by SWISSPFAM
  • Other resources with information on 1V4G
  • Community annotation for 1V4G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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