1V7Y Lyase date Dec 25, 2003
title Crystal Structure Of Tryptophan Synthase Alpha-Subunit From Escherichia Coli At Room Temperature
authors K.Nishio, Y.Morimoto, M.Ishizuka, K.Ogasahara, K.Yutani, T.Tsukih Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tryptophan Synthase Alpha Chain
Chain: A, B
Ec: 4.2.1.20
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc8ptrpa, Trpa
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.420 45.100 72.060 90.00 96.90 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme Lyase E.C.4.2.1.20 BRENDA
related structures by homologous chain: 1XC4, 2TSY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational Changes in the alpha-Subunit Coupled to Binding of the beta(2)-Subunit of Tryptophan Synthase from Escherichia coli: Crystal Structure of the Tryptophan Synthase alpha-Subunit Alone(,)., Nishio K, Morimoto Y, Ishizuka M, Ogasahara K, Tsukihara T, Yutani K, Biochemistry 2005 Feb 1;44(4):1184-1192. PMID:15667212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1v7y.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1v7y.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (1v7y.pdb3.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1V7Y
  • CSU: Contacts of Structural Units for 1V7Y
  • Likely Quarternary Molecular Structure file(s) for 1V7Y
  • Retrieve 1V7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V7Y from S2C, [Save to disk]
  • View 1V7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V7Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V7Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v7y_B] [1v7y_A] [1v7y]
  • SWISS-PROT database: [P0A877]
  • Domain organization of [TRPA_ECOLI] by SWISSPFAM
  • Other resources with information on 1V7Y
  • Community annotation for 1V7Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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