1VAO	Flavoenzyme	date	Apr 10, 1997
title	Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxid
authors	A.Mattevi
compound		source
Molecule: Vanillyl-Alcohol Oxidase Chain: A, B Ec: 1.1.3.13 Other_details: Covalent Bond Between Fad And His 422		Organism_scientific: Penicillium Simplicissimum Organism_taxid: 69488 Atcc: 90172 Organelle: Peroxisomes Cellular_location: Intracellular Other_details: Fungus
symmetry	Space Group: I 4	R_factor 0.220 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.240 130.240 133.510 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ACT, CL, FAD	enzyme	Oxidoreductase E.C.1.1.3.13 BRENDA
related structures	by homologous chain: 1QLU, 1W1K
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity., Mattevi A, Fraaije MW, Mozzarelli A, Olivi L, Coda A, van Berkel WJ, Structure. 1997 Jul 15;5(7):907-20. PMID:9261083

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (1vao.pdb1.gz) 714 Kb LPC: Ligand-Protein Contacts for 1VAO CSU: Contacts of Structural Units for 1VAO Likely Quarternary Molecular Structure file(s) for 1VAO Retrieve 1VAO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VAO from S2C, [Save to disk]

View 1VAO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VAO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VAO, from MSDmotif at EBI Genome occurence of 1VAO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vaoa1, region A:274-560 [Jmol] [rasmolscript] [script source]     - Domain d1vaoa2, region A:6-273 [Jmol] [rasmolscript] [script source]     - Domain d1vaob1, region B:274-560 [Jmol] [rasmolscript] [script source]     - Domain d1vaob2, region B:6-273 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vao_A] [1vao] [1vao_B] SWISS-PROT database: [P56216] Domain organization of [VAOX_PENSI] by SWISSPFAM

Other resources with information on 1VAO

Community annotation for 1VAO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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