1VCS Structural Genomics, Unknown Function date Mar 10, 2004
title Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain Of Musculus]
authors T.Abe, H.Hirota, T.Tomizawa, S.Koshiba, T.Kigawa, S.Yokoyama, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Vesicle Transport Through Interaction With T-Snar 1a;
Chain: A
Fragment: N-Terminal Domain (Residues 6-94)
Synonym: Vesicle Transport V-Snare Protein Vti1-Like 2, Vti
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Mus Musculus Adult Male Lung Cdna, Riken Full-Length
Library, Clone: 1200014a22 Product: Vti1a (Amino Acid 6-94)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030825-55
Other_details: Cell-Free Protein Synthesis System
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (519 Kb) [Save to disk]
  • Biological Unit Coordinates (1vcs.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1VCS
  • Original NMR restraints for 1VCS from PDB
  • Retrieve 1VCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VCS from S2C, [Save to disk]
    • View 1VCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VCS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VCS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vcs] [1vcs_A]
  • SWISS-PROT database: [O89116]
  • Domain organization of [VTI1A_MOUSE] by SWISSPFAM
    • Other resources with information on 1VCS
  • Community annotation for 1VCS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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