1VDS	Hydrolase	date	Mar 24, 2004
title	The Crystal Structure Of The Tetragonal Form Of Hen Egg Whit At 1.6 Angstroms Resolution In Space
authors	S.Aibara, A.Suzuki, A.Kidera, K.Shibata, T.Yamane, L.J.Delucas, M.
compound		source
Molecule: Lysozyme C Chain: A Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Tissue: Egg White
symmetry	Space Group: P 43 21 2	R_factor 0.185 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.192 79.192 37.933 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand		enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1GPQ, 1VAT
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (1vds.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 1VDS Likely Quarternary Molecular Structure file(s) for 1VDS Structure Factors (179 Kb) Retrieve 1VDS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VDS from S2C, [Save to disk] Re-refined 1vds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VDS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VDS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VDS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vdsa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vds] [1vds_A] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 1VDS: [LYZ1 ] by SMART

Other resources with information on 1VDS

Community annotation for 1VDS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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