1VGH Growth Factor date Dec 17, 1997
title Heparin-Binding Domain From Vascular Endothelial Growth Fact 20 Structures
authors W.J.Fairbrother, M.A.Champe, H.W.Christinger, B.A.Keyt, M.A.Star
compound source
Molecule: Vascular Endothelial Growth Factor-165
Chain: A
Fragment: Heparin-Binding Domain
Synonym: Vegf-165
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the heparin-binding domain of vascular endothelial growth factor., Fairbrother WJ, Champe MA, Christinger HW, Keyt BA, Starovasnik MA, Structure 1998 May 15;6(5):637-48. PMID:9634701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (1vgh.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1VGH
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1VGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VGH from S2C, [Save to disk]
    • View 1VGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 1VGH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VGH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vgh__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vgh_A] [1vgh]
  • SWISS-PROT database: [P15692]
  • Domain organization of [VEGFA_HUMAN] by SWISSPFAM
    • Other resources with information on 1VGH
  • Community annotation for 1VGH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1VGH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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