1VJO	Crystal structure of Alanine--glyoxylate aminotransferase (ALR1004) from Nostoc sp. at 1.70 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.20182
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.70
ligand	MSE, PLP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor., Won Han G, Schwarzenbacher R, Page R, Jaroszewski L, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, Didonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nigoghossian E, Ouyang J, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J, Wilson IA, Proteins 2005 Jan 18;. PMID:15657930

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (1vjo.pdb1.gz) 131 Kb LPC: Ligand-Protein Contacts for 1VJO CSU: Contacts of Structural Units for 1VJO Likely Quarternary Molecular Structure file(s) for 1VJO Structure Factors (773 Kb) Retrieve 1VJO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VJO from S2C, [Save to disk] Re-refined 1vjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VJO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VJO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VJO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vjoa_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vjo] [1vjo_A] SWISS-PROT database: [Q8YY48] Domain organization of [Q8YY48_ANASP] by SWISSPFAM

Other resources with information on 1VJO

Community annotation for 1VJO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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