1VLB Oxidoreductase date Jul 20, 2004
title Structure Refinement Of The Aldehyde Oxidoreductase From Des Gigas At 1.28 A
authors J.M.Rebelo, J.M.Dias, R.Huber, J.J.G.Moura, M.J.Romao
compound source
Molecule: Aldehyde Oxidoreductase
Chain: A
Synonym: Molybdenum Iron Sulfur Protein
Ec: 1.2.3.1
 Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
symmetry Space Group: P 61 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.780 141.780 160.870 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.28 Å
ligand CL, FES, IPA, MG, PCD enzyme Oxidoreductase E.C.1.2.3.1 BRENDA
note 1VLB supersedes 1HLR, 1ALO
related structures by homologous chain: 1SIJ
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceStructure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 A., Rebelo JM, Dias JM, Huber R, Moura JJ, Romao MJ, J Biol Inorg Chem 2001 Oct;6(8):791-800. PMID:11713686
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • Biological Unit Coordinates (1vlb.pdb1.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 1VLB
  • CSU: Contacts of Structural Units for 1VLB
  • Likely Quarternary Molecular Structure file(s) for 1VLB
  • Retrieve 1VLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VLB from S2C, [Save to disk]
    • View 1VLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VLB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1VLB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VLB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vlba2, region A:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1vlba3, region A:194-310 [Jmol] [rasmolscript] [script source]
        - Domain d1vlba4, region A:311-907 [Jmol] [rasmolscript] [script source]
        - Domain d1vlba1, region A:81-193 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vlb] [1vlb_A]
  • SWISS-PROT database: [Q46509]
  • Domain organization of [MOP_DESGI] by SWISSPFAM
  • Domain found in 1VLB: [Ald_Xan_dh_C ] by SMART
    • Other resources with information on 1VLB
  • Community annotation for 1VLB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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